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- Eagle Ray
- Earthworm Eel
- Eccentric Sand Dollar
- Echiura (Spoon Worms)
- Ecklonia (a type of seaweed, important for marine life)
- Edible Crab
- Edible Sea Cucumber
- Edible Sea Urchin
- Eel
- Eel Catfish
- Eel Cod
- Eel Goby
- Eelpout
- Egg-Yolk Jellyfish
- Egyptian Sea Star
- Eight-Armed Sea Star
- Electric Eel (technically freshwater but often associated with brackish environments)
- Electric Ray
- Elegant Firefish
- Elegant Moray Eel
- Elegant Sea Urchin
- Elkhorn Coral
- Elongate Surgeonfish
- Elvers (Young Eels)
- Ember Parrotfish
- Emerald Catfish
- Emerald Crab
- Emerald Damselfish
- Emerald Green Sea Slug
- Emerald Wrasse
- Emperor Angelfish
- Emperor Nautilus
- Emperor Shrimp
- Emperor Snapper
- Endeavor Dogfish
- Encrusting Sponge
- Epaulette Shark
- Erect-Crested Penguin (spends most of its life in the ocean)
- European Anchovy
- European Eel
- European Flounder
- European Hake
- European Lobster
- European Plaice
- European Sea Bass
- European Squid
- European Starfish
- European Sturgeon
- Evermann’s Lanternfish
- Eyed Flounder
- Eyed Skate
- Eyestalk Crab
